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I won’t help you with the problem but have an advice: you can eliminate switching between VS and MEW and build your project directly from MEW. There are two possibilities. Export makefile and use nmake to build yor project or start MSDEV to build your project. Try msdev /? to see how (VC6 msdev.exe is in common\msdev98\bin directory).
When I have to work on old VS projects, I use the first mentioned way. For new project I prefer to write own makefiles (the best case when you don’t need resources).